rs27440434 SNP Detail

Summary

• ID
  rs27440434
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:119494614 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGGGGGCCTG AAGGTATCAG
  AACCTATGAA CTTAAAATTG TAGGCACCAT GTGAATGCGG AGAACCAAAC CCTGAAAGTG
  TTCTTAATCA CGGACCCATC TTTCGAACCC TCATCAGCTG CTTTTTACCT CTACTTGGTG
  AAGCAGAAAA TCAACTTGGG GCTTTGTTGT GGATTCTTGA GAAAAATAGG ACCTTTAGTA
  Y
  GTTTCTCTCA TCCGTATGCA TCGGGTTTTG CTTTCCTGTT TATCTTTGGA CTCTTTTGAG
  CAATTTGGGG TTCTTTTCAA TCATTGGTGC AGTTTCTGTT CAGGATTGGT TTTGTTGTTC
  GGCTTTGTTT GTTGAACAAT GTTATCATAT TATTGCTAAA TAGAGGAACT GTGACCATTG
  CAGTGGAGAG AGAACTCAAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	BTBR T<+> Itpr3/J	DBA/2J	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37649864	NES09028292	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	BTBR T<+> Itpr3/J	DBA/2J	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27440434					SNP	C	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37649864	NES09028292	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:119494614 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12124	CpG island 12124	1180 bp distal
Gm75025	predicted gene, 75025	971 bp downstream
Gm75032	predicted gene, 75032	960 bp upstream
H3f3c	H3 histone, family 3C	1493 bp downstream
Ndufaf1	NADH:ubiquinone oxidoreductase complex assembly factor 1	1312 bp upstream
Rr397235	regulatory region 397235	1161 bp downstream
Rr563557	regulatory region 563557	1346 bp distal
Rr563558	regulatory region 563558	822 bp distal
Rr563559	regulatory region 563559	1799 bp proximal
Tssr25825	transcription start site region 25825	1298 bp upstream