rs27440433 SNP Detail

Summary

• ID
  rs27440433
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:119494777 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AATGT TATCATATTA TTGCTAAATA
  R
  AGGAACTGTG ACCATTGCAG TGGAG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	LG/J	MOLF/EiJ	PWD/PhJ	SM/J	WSB/EiJ
ss37649863	NES09028293	PERLEGEN	MM_PANEL2	f	SNP	A			G	G		A
ss147338565	ENSMUSSNP6863642	ENSEMBL	ENSEMBL_Sanger	f	SNP		A
ss320476622	CHEV_2_119490032	CHEVERUD	SCREENING_POP	f	SNP			G			A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	LG/J	MOLF/EiJ	PWD/PhJ	SM/J	WSB/EiJ
rs27440433					SNP	A	A	G	G	G	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37649863	NES09028293	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:119494777 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12124	CpG island 12124	1343 bp distal
Gm75025	predicted gene, 75025	808 bp downstream
Gm75032	predicted gene, 75032	797 bp upstream
H3f3c	H3 histone, family 3C	1330 bp downstream
Ndufaf1	NADH:ubiquinone oxidoreductase complex assembly factor 1	1475 bp upstream
Rr397235	regulatory region 397235	1324 bp downstream
Rr563557	regulatory region 563557	1509 bp distal
Rr563558	regulatory region 563558	985 bp distal
Rr563559	regulatory region 563559	1636 bp proximal
Tssr25825	transcription start site region 25825	1461 bp upstream
Tssr25826	transcription start site region 25826	1854 bp downstream