rs27438684 SNP Detail

Summary

• ID
  rs27438684
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:119069391 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GAGGGGTGAG GAGGGCCACT GGGGTGAGTC AACCTGCTGG
  TATGTGTATC TGGTAGGTGA GGGATGTCAG CTGGCCCAGC AGGTGTGTGT GCCTGTCCAC
  R
  TGAGCCAAGC AGGGCTGGAC CTGCTTAGGA TATGGTAGGC CTGGCTGTCT GTTTACCTTG
  TCTCGATGAT GGAGGCAAAA TGGGGAATAA GTCTTTGGCC                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37650910	NES09024020	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27438684					SNP	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37650910	NES09024020	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:119069391 () rs orientation: forward

Symbol	Name	Function Class
9130007G19Rik	RIKEN cDNA 9130007G19 gene	1635 bp upstream
Cpgi12109	CpG island 12109	579 bp distal
Rr563445	regulatory region 563445	1646 bp distal
Rr563446	regulatory region 563446	1834 bp distal
Rr563447	regulatory region 563447	1347 bp distal
Rr563448	regulatory region 563448	1510 bp distal
Rr563449	regulatory region 563449	1268 bp distal
Rr563450	regulatory region 563450	812 bp distal
Rr563451	regulatory region 563451	482 bp proximal
Spint1	serine protease inhibitor, Kunitz type 1	Intron
Tssr19609	transcription start site region 19609	1693 bp downstream
Tssr19610	transcription start site region 19610	1536 bp downstream
Tssr19611	transcription start site region 19611	1490 bp downstream
Tssr19612	transcription start site region 19612	1436 bp downstream
Tssr19613	transcription start site region 19613	1402 bp downstream
Tssr19614	transcription start site region 19614	1386 bp downstream
Tssr19615	transcription start site region 19615	1358 bp downstream
Tssr19616	transcription start site region 19616	1265 bp downstream
Tssr19617	transcription start site region 19617	1261 bp downstream
Tssr19618	transcription start site region 19618	1200 bp downstream
Tssr19619	transcription start site region 19619	1170 bp downstream
Tssr19620	transcription start site region 19620	1721 bp upstream