rs27438668 SNP Detail

Summary

• ID
  rs27438668
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:119072095 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  ACTGACTGCT GTACATTGAC CTCCACACAC ATGCCTTGTC ATGCCCGTGC CCACATCACA
  TACACAGCAT GTACATACTA GACAAACAGA TGTACTGTAA CAATAATAAA CCTGAAGGCA
  AGGTTTAGGA AGGAGATGAT TTTAAATACT TCCCCTCAGC CTGACGTGGT CGCTCATATC
  CGTAATCTCA GCACTGGGGA GCCTTGGGCA CTCGGGTTTG AAAGCCAGCC TGGACTGCAC
  AGTAAGTTTT AGGCTGGATT ACATAGTGAG ACCCTGTCTA AATCAGAGAG AAAGGAAAAA
  R
  AAAAACCAGT CATTTTGATA GATTCTCTTC TCTCTACCCA CTTTCTCACT CTAGTGAAAA
  CGTGCCTTTT ACTCTAAGGA ACACGAGGGG GTTTGGGCAT GTTGGTTTTA CATTTGTATG
  GTTCTTTGTC CAGGTGTGCT TTCTACTCAC CAAGGCCAGA GGGTAATGTA CGGGAATCTG
  TTCTCTCTTC ACTGTGTGTT TCCTGGGCAT CAAGCTCAGG TCAGGCTTGC TGGCAGATAC
  CTTCCCCCTG CTGAGACATC TTACTGACTC AAAAGTCAAA TTTTAGATAG AGTGTGAGAG
                                                                   
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45365039	mCV24414228	ABI	CRAMUS_MOUSE	f	SNP	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs27438668					SNP	A	A	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:119072095 () rs orientation: forward

Symbol	Name	Function Class
Rr563451	regulatory region 563451	978 bp distal
Rr563452	regulatory region 563452	981 bp proximal
Spint1	serine protease inhibitor, Kunitz type 1	within coordinates
Tssr19620	transcription start site region 19620	967 bp downstream