rs27438660 SNP Detail

Summary

• ID
  rs27438660
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:119072791 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCTAA TCTCCAGCAC ATGCTCACTG
  Y
  ACCCCCAGAT TAGCAGCTTT TTTAG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37650886	NES09023873	PERLEGEN	MM_PANEL2	f	SNP	T		T	T	T	T	T	T	C		T	T	T	C		T
ss147327006	ENSMUSSNP6741034	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	T				T
ss320474371	CHEV_2_119068046	CHEVERUD	SCREENING_POP	f	SNP										C					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27438660					SNP	T	T	T	T	T	T	T	T	C	C	T	T	T	C	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37650886	NES09023873	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:119072791 () rs orientation: forward

Symbol	Name	Function Class
Rr563451	regulatory region 563451	1674 bp distal
Rr563452	regulatory region 563452	285 bp proximal
Spint1	serine protease inhibitor, Kunitz type 1	Intron
Tssr19620	transcription start site region 19620	1663 bp downstream