rs27438646 SNP Detail

Summary

• ID
  rs27438646
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:119075089 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CGTATTCATA GGTTCTAGAA GTTCTGTGGG TGTAAGGATG
  GGGGCCGTCC AGCCCATCTT TAGCAGGAAT CCATCTTTGT GCTTATCTCT CAGACAGAAC
  Y
  CCTAGCTCTC AGGTGAAGGA AGCCTCAAGC TGTCAGGGCC AGGAAGGGTG TGGCTCCTGG
  AAATTCCCTG TTGTTGATGG CAGAGGCACC CTGTCCCAT                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37650872	NES09023762	PERLEGEN	MM_PANEL2	f	SNP	C	T	C	T	C	C	T	T	C	C		C	C	C	C		C
ss320474400	CHEV_2_119070344	CHEVERUD	SCREENING_POP	f	SNP											C					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27438646					SNP	C	T	C	T	C	C	T	T	C	C	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37650872	NES09023762	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:119075089 () rs orientation: forward

Symbol	Name	Function Class
Rr563452	regulatory region 563452	1692 bp distal
Rr563453	regulatory region 563453	324 bp proximal
Spint1	serine protease inhibitor, Kunitz type 1	Intron