rs27438636 SNP Detail

Summary

• ID
  rs27438636
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:119076135 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGTTGTCAG AGAACATCAG
  GAAGTGGCCA GGCTTCATGA CCAGTGTCGT GTATAGAGAA AACGTCCGGA AGAAGTGGAG
  CTGTGGGGAC TTAAGGAGGG GACCTACCTG TTCCAACTGA CAAGAACTGA CTCAGACCAA
  CCAGAGGAAA CAGCCAACCT GACTATCACT GTGCTAACTG CCAAGCAGAC AGAAGGTGAC
  R
  GGGGTGGACA TGAGGTGCCT GGAGCCCCCT TCCCCCCACT GATAACCCTC TAGTCCAAAT
  TGACAAGTTC TCCTCCATCT AGATTATTGC CTCGCATCCT ACAAGGTGGG CCGCTGCCGG
  GGCTCCTTCC CACGCTGGTA CTACGACCCC AAGGAACAGA TCTGCAAAAG TTTTACTTTT
  GGAGGTTGCC TGGGCAACAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37650862	NES09023731	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27438636					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37650862	NES09023731	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:119076135 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr563453	regulatory region 563453			701 bp distal
Spint1	serine protease inhibitor, Kunitz type 1			Intron
				Splice-Site