TCATTGTCCC CAGTTTATAG ATGAAATGAC ACAGTATTGC ATGGTCGAGA ACCTGTGGTT AACCCTGCCA GTAAGAGAGA CAGGGAAGAT CTATATGAGC Y GACTGATTAA ACTCCGCTCA CCTCGCCCAC TGCCATTGTT CTCTCAGTCT CCCTGTGCCA GTCTGCTGTC TACATTTTTA TTCATTTTTA GTATATTTT Y = C/T Note: Sequence in lower case indicates low-complexity or repetitive sequence |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type | 129S1/SvImJ |
129X1/SvJ |
A/J |
AKR/J |
BALB/cByJ |
BTBR T<+> Itpr3 |
C3H/HeJ |
CAST/EiJ |
DBA/2J |
FVB/NJ |
KK/HlJ |
MOLF/EiJ |
NOD/ShiLtJ |
NZW/LacJ |
PWD/PhJ |
WSB/EiJ |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
ss37631874 | NES09005103 | PERLEGEN | MM_PANEL2 | f | SNP | T | T | T | T | T | C | T | C | T | T | C | T | T | C | T | |
ss45373595 | mCV22622668 | ABI | CRAMUS_MOUSE | f | SNP | T | T | T | C | ||||||||||||
SNP Consensus Information | |||||||||||||||||||||
SNP | Consensus Type | 129S1/SvImJ |
129X1/SvJ |
A/J |
AKR/J |
BALB/cByJ |
BTBR T<+> Itpr3 |
C3H/HeJ |
CAST/EiJ |
DBA/2J |
FVB/NJ |
KK/HlJ |
MOLF/EiJ |
NOD/ShiLtJ |
NZW/LacJ |
PWD/PhJ |
WSB/EiJ |
||||
rs27438041 | SNP | T | T | T | T | T | T | C | T | C | T | T | C | T | T | C | T |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type |
Alleles |
---|---|---|---|---|---|---|
ss37631874 | NES09005103 | PERLEGEN | MM_PANEL | f | SNP | C/T |
Location: Chr2:126339359 () rs orientation: forward | ||||||||
Symbol | Name | Transcript | Protein | Function Class |
Allele | Residue | Codon Position |
AA Position |
---|---|---|---|---|---|---|---|---|
Atp8b4 | ATPase, class I, type 8B, member 4 | Intron | ||||||
Rr564345 | regulatory region 564345 | 915 bp distal | ||||||
Rr564346 | regulatory region 564346 | 1432 bp proximal | ||||||
Tssr19934 | transcription start site region 19934 | 1626 bp upstream | ||||||
Tssr26038 | transcription start site region 26038 | 722 bp downstream |
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO) |
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last database update 03/25/2025 MGI 6.24 |
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