rs27438039 SNP Detail

Summary

• ID
  rs27438039
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:126339661 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAATTTTGTG TGTGAGTATT
  TCCATGCATG TATGCATGTG CACCCGTTCC TGCCTGATAT CTATGGAGGC CAGAAAAGGG
  GATGAGAGTC CCTGGAACTG GAATGTCAGA TGGTTGTAAA CTGTCCTGTG GGTGCTGGAA
  ACTGAACCTG CGTCTTCACC TGTCCAGCCC ATGCCCAAGT GCTTGAAAGA TTACTGTCAC
  R
  GCACAGGGCA CACGGAAAGA GTCTTGAGGA CAACGGCACT CATAAAGCAG AGTTACATGC
  AGTGTCTCTG TGGCTAACTC GCCACTGTCG TCTGTGTGAT CCTTATGTTG GGGTCAGAAC
  CAAGAGGGCC CAGGTGACGA CTAGGCCCCT GAACACTAGG GGAATGGAGA TGACATTGAC
  TATGATGGCA GCAGTCAAGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37631872	NES09005066	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27438039					SNP	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37631872	NES09005066	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:126339661 () rs orientation: forward

Symbol	Name	Function Class
Atp8b4	ATPase, class I, type 8B, member 4	Intron
Rr564345	regulatory region 564345	1217 bp distal
Rr564346	regulatory region 564346	1130 bp proximal
Rr564347	regulatory region 564347	1702 bp proximal
Tssr19934	transcription start site region 19934	1324 bp upstream
Tssr26038	transcription start site region 26038	420 bp downstream
Tssr26039	transcription start site region 26039	1940 bp downstream
Tssr26040	transcription start site region 26040	1973 bp downstream
Tssr26041	transcription start site region 26041	1990 bp downstream