rs27438038 SNP Detail

Summary

• ID
  rs27438038
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:126339751 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTGGAACTG GAATGTCAGA
  TGGTTGTAAA CTGTCCTGTG GGTGCTGGAA ACTGAACCTG CGTCTTCACC TGTCCAGCCC
  ATGCCCAAGT GCTTGAAAGA TTACTGTCAC AGCACAGGGC ACACGGAAAG AGTCTTGAGG
  ACAACGGCAC TCATAAAGCA GAGTTACATG CAGTGTCTCT GTGGCTAACT CGCCACTGTC
  R
  TCTGTGTGAT CCTTATGTTG GGGTCAGAAC CAAGAGGGCC CAGGTGACGA CTAGGCCCCT
  GAACACTAGG GGAATGGAGA TGACATTGAC TATGATGGCA GCAGTCAAGG AAGAGGAGGA
  CATGGAATGG CAGAAACAGA AACAGAAAAG GACGGTGATA AATCCAATCT GATTACATTA
  GCCTCTCCAC CATCTTCAAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37631871	NES09005070	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27438038					SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37631871	NES09005070	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:126339751 () rs orientation: forward

Symbol	Name	Function Class
Atp8b4	ATPase, class I, type 8B, member 4	Intron
Rr564345	regulatory region 564345	1307 bp distal
Rr564346	regulatory region 564346	1040 bp proximal
Rr564347	regulatory region 564347	1612 bp proximal
Tssr19934	transcription start site region 19934	1234 bp upstream
Tssr26038	transcription start site region 26038	330 bp downstream
Tssr26039	transcription start site region 26039	1850 bp downstream
Tssr26040	transcription start site region 26040	1883 bp downstream
Tssr26041	transcription start site region 26041	1900 bp downstream
Tssr26042	transcription start site region 26042	1945 bp downstream