rs27438036 SNP Detail

Summary

• ID
  rs27438036
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:126339887 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GGGCCCAGGT GACGACTAGG CCCCTGAACA CTAGGGGAAT
  GGAGATGACA TTGACTATGA TGGCAGCAGT CAAGGAAGAG GAGGACATGG AATGGCAGAA
  M
  CAGAAACAGA AAAGGACGGT GATAAATCCA ATCTGATTAC ATTAGCCTCT CCACCATCTT
  CAAAGCCAAA TAGAATGGAC AAATGTGTAG GCGTGGAAC                       
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss37631869	NES09005076	PERLEGEN	MM_PANEL2	f	SNP		A	A	A	C		C	C	A	C	A	C	A
ss45285551	mCV22622703	ABI	CRAMUS_MOUSE	f	SNP	A	A				A		C
ss147505022	ENSMUSSNP7005205	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A						C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs27438036					SNP	A	A	A	A	C	A	C	C	A	C	A	C	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37631869	NES09005076	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:126339887 () rs orientation: forward

Symbol	Name	Function Class
Atp8b4	ATPase, class I, type 8B, member 4	Intron
Rr564345	regulatory region 564345	1443 bp distal
Rr564346	regulatory region 564346	904 bp proximal
Rr564347	regulatory region 564347	1476 bp proximal
Rr564348	regulatory region 564348	1870 bp proximal
Tssr19934	transcription start site region 19934	1098 bp upstream
Tssr26038	transcription start site region 26038	194 bp downstream
Tssr26039	transcription start site region 26039	1714 bp downstream
Tssr26040	transcription start site region 26040	1747 bp downstream
Tssr26041	transcription start site region 26041	1764 bp downstream
Tssr26042	transcription start site region 26042	1809 bp downstream
Tssr26043	transcription start site region 26043	1872 bp downstream
Tssr26044	transcription start site region 26044	1947 bp downstream