rs27438030 SNP Detail

Summary

• ID
  rs27438030
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:126340114 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CCCGGGGGTG AATGGAAGAA CCAGAGGAAA GAAAGACCAG
  GAGCTGAGGA GAATGAGCCG GTTCAAGAGC AATGACAGAG TGAAGGGAGG ATTCACCCTT
  M
  AAAGACCGGT TCGGGAAGGG CGTGGCACAG GAGAGACCTC AGGAAACCGC AGTCTAGAGA
  GTAAATCGGG GAAAGGGAAG GGGCCCAGAG TAAGGAAGA                       
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37631863	NES09005091	PERLEGEN	MM_PANEL2	f	SNP	A		A	A	A	A		A	A	A	A	C	C
ss147505050	ENSMUSSNP6479028	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	A				C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27438030					SNP	A	A	A	A	A	A	C	A	A	A	A	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37631863	NES09005091	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:126340114 () rs orientation: forward

Symbol	Name	Function Class
Atp8b4	ATPase, class I, type 8B, member 4	Intron
Rr564345	regulatory region 564345	1670 bp distal
Rr564346	regulatory region 564346	677 bp proximal
Rr564347	regulatory region 564347	1249 bp proximal
Rr564348	regulatory region 564348	1643 bp proximal
Tssr632	transcription start site region 632	1821 bp upstream
Tssr19934	transcription start site region 19934	871 bp upstream
Tssr19935	transcription start site region 19935	1781 bp upstream
Tssr26038	transcription start site region 26038	20 bp upstream
Tssr26039	transcription start site region 26039	1487 bp downstream
Tssr26040	transcription start site region 26040	1520 bp downstream
Tssr26041	transcription start site region 26041	1537 bp downstream
Tssr26042	transcription start site region 26042	1582 bp downstream
Tssr26043	transcription start site region 26043	1645 bp downstream
Tssr26044	transcription start site region 26044	1720 bp downstream