rs27438029 SNP Detail

Summary

• ID
  rs27438029
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:126340241 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ACAGGAGAGA CCTCAGGAAA CCGCAGTCTA GAGAGTAAAT
  CGGGGAAAGG GAAGGGGCCC AGAGTAAGGA AGAAACGTGT TTCTGGAAAA GCAGAGCCCT
  Y
  AGAATGTCTA ATACTCACTT ACAAATGTAT TTACCGACAT GTAAAATATT TACCATAACT
  ACGAAGCTGC TGTTCTCTCT GCTAGCCTTC CAGGAGACA                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37631862	NES09005095	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	T	C	T	C	C	T	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27438029					SNP	C	C	C	C	C	T	C	T	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37631862	NES09005095	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:126340241 () rs orientation: forward

Symbol	Name	Function Class
Atp8b4	ATPase, class I, type 8B, member 4	Intron
Rr564345	regulatory region 564345	1797 bp distal
Rr564346	regulatory region 564346	550 bp proximal
Rr564347	regulatory region 564347	1122 bp proximal
Rr564348	regulatory region 564348	1516 bp proximal
Tssr632	transcription start site region 632	1694 bp upstream
Tssr19934	transcription start site region 19934	744 bp upstream
Tssr19935	transcription start site region 19935	1654 bp upstream
Tssr26038	transcription start site region 26038	147 bp upstream
Tssr26039	transcription start site region 26039	1360 bp downstream
Tssr26040	transcription start site region 26040	1393 bp downstream
Tssr26041	transcription start site region 26041	1410 bp downstream
Tssr26042	transcription start site region 26042	1455 bp downstream
Tssr26043	transcription start site region 26043	1518 bp downstream
Tssr26044	transcription start site region 26044	1593 bp downstream
Tssr26045	transcription start site region 26045	1971 bp downstream