rs27438019 SNP Detail

Summary

• ID
  rs27438019
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:126341468 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TATTTTTAGG ACAAAGCAAA CAATACATAT TTACGAAAGC
  CCAACCATAC AGATAGAAAC GGCAAACCAA AAGAGGAATT TGAAAGAAAG AAAATGTCAT
  Y
  AAGTCCCGAG CAAACACCAC ATGGTCTGTC TCCTTCGCCG GGGAATGGTC CCACCAACTC
  ACCTCAACCT GGACCTAACT TTCGCCCTGA GAAACGGGG                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37631852	NES09005040	PERLEGEN	MM_PANEL2	f	SNP	C		C	C	C	C	T	T	T	C	C	T	C	C	T	T
ss45355776	mCV23122569	ABI	CRAMUS_MOUSE	f	SNP		C	C						T
ss147505106	ENSMUSSNP6871147	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	C						T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27438019					SNP	C	C	C	C	C	C	T	T	T	C	C	T	C	C	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37631852	NES09005040	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:126341468 () rs orientation: forward

Symbol	Name	Function Class
Atp8b4	ATPase, class I, type 8B, member 4	Intron
Rr564346	regulatory region 564346	272 bp distal
Rr564347	regulatory region 564347	within coordinates
Rr564348	regulatory region 564348	289 bp proximal
Rr564349	regulatory region 564349	1049 bp proximal
Tssr632	transcription start site region 632	467 bp upstream
Tssr19934	transcription start site region 19934	472 bp downstream
Tssr19935	transcription start site region 19935	427 bp upstream
Tssr26038	transcription start site region 26038	1374 bp upstream
Tssr26039	transcription start site region 26039	133 bp downstream
Tssr26040	transcription start site region 26040	166 bp downstream
Tssr26041	transcription start site region 26041	183 bp downstream
Tssr26042	transcription start site region 26042	228 bp downstream
Tssr26043	transcription start site region 26043	291 bp downstream
Tssr26044	transcription start site region 26044	366 bp downstream
Tssr26045	transcription start site region 26045	744 bp downstream
Tssr26046	transcription start site region 26046	1083 bp downstream