rs27438016 SNP Detail

Summary

• ID
  rs27438016
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:126342116 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGAGTCTGAG AGCCCTGAGG
  AGCATCTCCT CCTACTGTAA CCTGCTACCA CAGCCAGGCT GAACAAAAGG GGACTCCCAA
  GAGAGTGTTC CCGGAGGATG GCTTCTTCTG TGGAAATCAA GGTAGAGGTG ATCAACACAA
  GAAAAGCCAG CTGGCTACAG CACCTACTTG CCAACCTTCT AGCTGTCCTG GACTGAGAAG
  R
  ATAAGCAAGC ATCTTTGGAG ATGCCACCTG TTTTCCCAGA GATTAAACGA TCGGCAATGG
  GGAGACATCA CAGAGGGAAC TGGGCTCTCT CAGGAATGAA AGCTAAGCAG GCACAAGCAG
  CCTTTAGTGC TCAATGCAAC ACTTCTTTCC CAACATCCTT ACTTAATGTC AAAGCAGAGG
  ATGCCAGGGT TAACCCTTTC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37631849	NES09005043	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	A	A	G	G	A	G	G	A	G
ss147505143	ENSMUSSNP5573334	ENSEMBL	ENSEMBL_Sanger	f	SNP	G					A
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27438016					SNP	G	G	G	G	A	A	G	G	A	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37631849	NES09005043	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:126342116 () rs orientation: forward

Symbol	Name	Function Class
Atp8b4	ATPase, class I, type 8B, member 4	Intron
Rr564346	regulatory region 564346	920 bp distal
Rr564347	regulatory region 564347	360 bp distal
Rr564348	regulatory region 564348	within coordinates
Rr564349	regulatory region 564349	401 bp proximal
Tssr632	transcription start site region 632	167 bp downstream
Tssr19934	transcription start site region 19934	1120 bp downstream
Tssr19935	transcription start site region 19935	200 bp downstream
Tssr26039	transcription start site region 26039	484 bp upstream
Tssr26040	transcription start site region 26040	471 bp upstream
Tssr26041	transcription start site region 26041	454 bp upstream
Tssr26042	transcription start site region 26042	402 bp upstream
Tssr26043	transcription start site region 26043	338 bp upstream
Tssr26044	transcription start site region 26044	264 bp upstream
Tssr26045	transcription start site region 26045	96 bp downstream
Tssr26046	transcription start site region 26046	435 bp downstream