rs27434227 SNP Detail

Summary

• ID
  rs27434227
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:127080785 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AACTGGAGCG AGAGGAGGAA GTCACGGGCC CAGTTATTGC
  ACCTCTCTTC CCACAGGTAT GGTATGTCCT GGGAGCTGGC TTTGCCATGA GTCCATTTGA
  S
  GCCTTGTTGA CTGCCTAGGT TTTGGGCACG GGATACATTT CGCATGAAGG GAGGGTAGTT
  TAGGGGTAGT GAATTCATAA GACTGAGTTT TAATCTTGG                       
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37629965	NES09011659	PERLEGEN	MM_PANEL2	f	SNP	G		G	G	G	G	C		G	C	G	G	G	G	G	C	G
ss45260841	mCV22835850	ABI	CRAMUS_MOUSE	f	SNP		G	G					G		C
ss147524158	ENSMUSSNP4516139	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	G							C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27434227					SNP	G	G	G	G	G	G	C	G	G	C	G	G	G	G	G	C	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37629965	NES09011659	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:127080785 () rs orientation: forward

Symbol	Name	Function Class
Rr564475	regulatory region 564475	1212 bp proximal
Snrnp200	small nuclear ribonucleoprotein 200 (U5)	Intron
Tssr19997	transcription start site region 19997	425 bp downstream