rs27434224 SNP Detail

Summary

• ID
  rs27434224
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:127081234 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACTATATTTC ACTCTGGTTC
  TAGTTGCAAT TGAATTTTAA AATGAACAGA AGGAAATCTC ATCTTTATGT GGGAGAATTG
  AAAGTTGGAT GCAAATGTTA GATGCACTTC ATGTCCTTCT ATAGACAAGC TATTCAAGTT
  CCTAAGGAAA GTACCACTGA GGCACATGGG CTCTTCTGTG GCCAACAAAG AGGGCTTTTC
  Y
  AGAGTGACAA TGTCAGAAGA GGCCCCACAA GCTCGTTTGT ATTCTCAGTG TTGCAGGTTC
  ATCTCCATGT TAAGATTTCA GCTAGCTTGC CTTGTACATG AGTTTCTTAA GAACTTGAAG
  CTTATATGCT CCGAGGCTAA ATCTCTAACA ATGCGTCTTA GATTCAGTGA CAAGCATTAA
  ATTAAAAGGT GCACTGGGTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss37629962	NES09011662	PERLEGEN	MM_PANEL2	f	SNP		T	C	T	C	C	C	C	C	C	C	C
ss147524192	ENSMUSSNP4164868	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs27434224					SNP	C	T	C	T	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37629962	NES09011662	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:127081234 () rs orientation: forward

Symbol	Name	Function Class
Ciao1	cytosolic iron-sulfur protein assembly 1	1624 bp downstream
Rr564475	regulatory region 564475	763 bp proximal
Snrnp200	small nuclear ribonucleoprotein 200 (U5)	Intron
Tssr19997	transcription start site region 19997	874 bp downstream