rs27434219 SNP Detail

Summary

• ID
  rs27434219
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:127082168 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATTTCTGCCT GTTCTCTCTA
  GGTGAAGCTA GACTTTGTGG CCCCAGCCAC AGGTGGCCAC AACTATACCC TGTACTTCAT
  GAGTGACGCA TACATGGGCT GTGACCAGGA GTATAAGTTC AGTGTGGATG TGAAAGAAGC
  TGAGACAGAC AGTGATTCAG ATTGAGTCTG AGGCACTGAA CCTGAAAACA GGAATGTGGA
  Y
  TAGGTCTGTC AGGCTGAGGT CTGGCCATTC AGGCCGCTGC TGTCCCCAGT CCACATCCAG
  TTACTGTCCC ACTTTGGACC TTAGTTCAAG GTCTGGGTCT TGTATTTTCA AGTGTCATGT
  CAAGCATGAA CTGTACAATA TTTGGAGGCA TGGTTTTCTA GTTCCTTGAG TCAGACATTC
  TAATAAATAA TTTGAAAAAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37629956	NES09011587	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27434219					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37629956	NES09011587	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:127082168 () rs orientation: forward

Symbol	Name	Function Class
Ciao1	cytosolic iron-sulfur protein assembly 1	690 bp downstream
Rr564475	regulatory region 564475	within coordinates
Snrnp200	small nuclear ribonucleoprotein 200 (U5)	mRNA-UTR
Tssr19997	transcription start site region 19997	1808 bp downstream