rs27434216 SNP Detail

Summary

• ID
  rs27434216
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:127082306 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCTGAGACAG ACAGTGATTC
  AGATTGAGTC TGAGGCACTG AACCTGAAAA CAGGAATGTG GACTAGGTCT GTCAGGCTGA
  GGTCTGGCCA TTCAGGCCGC TGCTGTCCCC AGTCCACATC CAGTTACTGT CCCACTTTGG
  ACCTTAGTTC AAGGTCTGGG TCTTGTATTT TCAAGTGTCA TGTCAAGCAT GAACTGTACA
  R
  TATTTGGAGG CATGGTTTTC TAGTTCCTTG AGTCAGACAT TCTAATAAAT AATTTGAAAA
  AACTATATGT CCTTAACAGT GATACTAAAT TTTCTTTAAT CAAAGGTCAT GGCCAAAAAA
  AAAAAAAAAA ACCCTTTTTG GCACTGACCT TTTCTATGGA GTACATAAAG AACAAACTTG
  CCCTCTGATT GGGTTAGTCT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

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SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	BALB/cByJ	WSB/EiJ
ss37629952	NES09011592	PERLEGEN	MM_PANEL2	f	SNP	A	A	G
SNP Consensus Information
SNP					Consensus Type	A/J	BALB/cByJ	WSB/EiJ
rs27434216					SNP	A	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37629952	NES09011592	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:127082306 () rs orientation: forward

Symbol	Name	Function Class
Ciao1	cytosolic iron-sulfur protein assembly 1	552 bp downstream
Rr564475	regulatory region 564475	within coordinates
Snrnp200	small nuclear ribonucleoprotein 200 (U5)	mRNA-UTR
Tssr19997	transcription start site region 19997	1946 bp downstream