rs27434214 SNP Detail

Summary

• ID
  rs27434214
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:127082490 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGCATGAAC TGTACAATAT
  TTGGAGGCAT GGTTTTCTAG TTCCTTGAGT CAGACATTCT AATAAATAAT TTGAAAAAAC
  TATATGTCCT TAACAGTGAT ACTAAATTTT CTTTAATCAA AGGTCATGGC CAAAAAAAAA
  AAAAAAAACC CTTTTTGGCA CTGACCTTTT CTATGGAGTA CATAAAGAAC AAACTTGCCC
  W
  CTGATTGGGT TAGTCTGAAG GACAAAACAA TGGTACATAG CTTCTCTTCA AAGTTACTCT
  CATAGCAGGA GCTGACTCCC ATCTTGGCCA GAGAACAAAA GGTAGAGGCT CCTCTTGATC
  TATGTTGTAA AATTCTGTAG CCTTCCCTCC CAGGAGGCAG CACTGGGGTG GTTAATATAC
  ACCAGGTAGA TTCGACTTTT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37629950	NES09011597	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27434214					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37629950	NES09011597	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:127082490 () rs orientation: forward

Symbol	Name	Function Class
Ciao1	cytosolic iron-sulfur protein assembly 1	368 bp downstream
Rr564475	regulatory region 564475	153 bp distal
Snrnp200	small nuclear ribonucleoprotein 200 (U5)	119 bp downstream