rs27434073 SNP Detail

Summary

• ID
  rs27434073
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:127151300 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGTTGTATT TCTGTACATT
  TTGTAGCATG TCAGTGTCCT TTTTAAACTG TGGAGTTCTG GGTTGGACCC CATCTGCTCC
  CACAAGGAAA GGACCATACT GGCCACTGCC GCTGGTCCCT TAGTGGCTCC TGCTTCACTG
  CCAGCCTTCC CATCTGGATT GGGATAAGGA GGAACAATGG CACGCTCTCG TTCTGAAAAG
  W
  GCCCATCTCC TTACTGGTGC CCATCATTCC TTTCCACAGC CTGACGTCAG CATGTAGTCA
  GAATACCATT GCTTCTGGGA AGCAGACGCT AAGGTCAGCG ATTCTCAACC TTTCTGATGC
  TGCGACCCCT TATAGGTCCT CAAGTTGTGG TGACCCCAAA CAAAATTATT TTTATTGCTT
  ACTTCACATC TAATTTTGCT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37629802	NES09009438	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	A	T	T	T	A	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27434073					SNP	T	T	T	T	T	T	A	T	T	T	A	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37629802	NES09009438	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:127151300 () rs orientation: forward

Symbol	Name	Function Class
Gm54150	predicted gene, 54150	within coordinates
Rr397283	regulatory region 397283	288 bp downstream
Rr397284	regulatory region 397284	1354 bp upstream
Rr564489	regulatory region 564489	1843 bp distal
Rr564490	regulatory region 564490	300 bp distal
Rr564491	regulatory region 564491	512 bp distal
Rr564492	regulatory region 564492	955 bp proximal
Rr564493	regulatory region 564493	1996 bp proximal