rs27434068 SNP Detail

Summary

• ID
  rs27434068
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:127151695 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TCTGAGCATT CATCAACCCA TTCTGATGCC TCCTACGAGG
  GCAGCAGGAA GAGCAGAAGT GGGAGGCAAC CAGTCGGCTT TGCCAAAAAT TACAGCCGCC
  Y
  AGAAAGCATG TTGCATTTAT TTATTTATTT TAATGTTTAT TTCTAAAGAT ATTTATTGTT
  AGTGTATGTG TGTGTGTGTG TGTGTGTGTG TGTGTGTGT                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37629797	NES09009401	PERLEGEN	MM_PANEL2	f	SNP	C		C	C	C	C	T	T	T	C	T	T	C	C	C	C
ss147525502	ENSMUSSNP1954319	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	C						T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27434068					SNP	C	C	C	C	C	C	T	T	T	C	T	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37629797	NES09009401	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:127151695 () rs orientation: forward

Symbol	Name	Function Class
Gm54150	predicted gene, 54150	within coordinates
Rr397283	regulatory region 397283	683 bp downstream
Rr397284	regulatory region 397284	959 bp upstream
Rr564490	regulatory region 564490	695 bp distal
Rr564491	regulatory region 564491	907 bp distal
Rr564492	regulatory region 564492	560 bp proximal
Rr564493	regulatory region 564493	1601 bp proximal