rs27434066 SNP Detail

Summary

• ID
  rs27434066
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:127152517 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATCCCCAGGA AGAGAGAGAC
  TGGGCCTGGC ATGGGCTTTG GAAACCTCAA GGCCCACCCC AAGTGACACA CTTCCTCCAA
  CAAGGCCACA CCTAATCCTA TCAAAGTTGC TTCTAATCCT ATCAGAGTTT ACTCCCTGGT
  AACTAAGCAT TCACGTATGA GCCTATGGGG ACCATTTCTA TCACACCACC ACACTATGGA
  Y
  AGTCAGGGTT TCATGAATTT TAAGTCCCAT CTTCTCTTTC TTGGTATATC CCTCAGTAGT
  TGCCAAGGGA GACAAGACAG AAGATATATA GTATTGGAGT CCCAACTGTA CTGGCTAATT
  CTTAATTACT GAAATGTCGG TTGGAAACAT AGATGCATCG TACACAAGAA CATACACATA
  CAAACGCATA AGCAAGAAAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37629795	NES09009352	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27434066					SNP	T	T	T	T	T	T	C	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37629795	NES09009352	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:127152517 () rs orientation: forward

Symbol	Name	Function Class
Gm54150	predicted gene, 54150	within coordinates
Rr397283	regulatory region 397283	1505 bp downstream
Rr397284	regulatory region 397284	137 bp upstream
Rr564490	regulatory region 564490	1517 bp distal
Rr564491	regulatory region 564491	1729 bp distal
Rr564492	regulatory region 564492	within coordinates
Rr564493	regulatory region 564493	779 bp proximal