rs27433520 SNP Detail

Summary

• ID
  rs27433520
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:129022044 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GCAGCTCCAG CCATGGGGCT TGGGGCTGTG GCTTGGTATC
  CGTGCTTCAT CAGAAGCATA CCATTTCCCT TCCTTCCCTA GCCAATGTCA GAACCAGCCA
  Y
  CAGGCCTAAA GAAGGAGGTG GCTTCTCCCA TGACACCCCT CAGACTGTGG TTTTTACATC
  CTGTGCTGGT GGCCTTTGTA CTTACCCCAT CCGGAGCTT                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss37622843	NES08999749	PERLEGEN	MM_PANEL2	f	SNP	T	C	T	T	C	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs27433520					SNP	T	C	T	T	C	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37622843	NES08999749	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:129022044 () rs orientation: forward

Symbol	Name	Function Class
AI847159	expressed sequence AI847159	within coordinates
Gm14029	predicted gene 14029	within coordinates
Rr367309	regulatory region 367309	within coordinates
Rr373843	regulatory region 373843	580 bp downstream
Rr564858	regulatory region 564858	988 bp distal
Rr564859	regulatory region 564859	within coordinates
Rr564860	regulatory region 564860	1580 bp proximal
Rr564861	regulatory region 564861	1838 bp proximal
Tssr26188	transcription start site region 26188	514 bp downstream
Tssr26189	transcription start site region 26189	538 bp downstream