rs27433517 SNP Detail

Summary

• ID
  rs27433517
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:129022568 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CTCAGCAAAC ATGAAACTCT AGCACCGACA CCAAAAAGCA
  CTTGTTGGGA CCTTAAGATA GAAAGCTCTG TCCTAAAGAG CAGAGATACT CCGGTCACTG
  Y
  TAAACTGAGA AAGCTTTGCA TCCAAACCTG GTCAGATTAG GATTAAGCTA TAATCAAATG
  AGGGCTCTGG CCAGTCCTGC TTTGCAGACT GTGAACTTG                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss37622840	NES08999752	PERLEGEN	MM_PANEL2	f	SNP	T		T		C	T	T	C	T	C	T
ss45377395	mCV23185349	ABI	CRAMUS_MOUSE	f	SNP		T	T	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs27433517					SNP	T	T	T	T	C	T	T	C	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37622840	NES08999752	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:129022568 () rs orientation: forward

Symbol	Name	Function Class
AI847159	expressed sequence AI847159	within coordinates
Gm14029	predicted gene 14029	within coordinates
Gm39932	predicted gene, 39932	1955 bp upstream
Rr367309	regulatory region 367309	354 bp downstream
Rr373843	regulatory region 373843	1104 bp downstream
Rr564858	regulatory region 564858	1512 bp distal
Rr564859	regulatory region 564859	within coordinates
Rr564860	regulatory region 564860	1056 bp proximal
Rr564861	regulatory region 564861	1314 bp proximal
Tssr26188	transcription start site region 26188	within coordinates
Tssr26189	transcription start site region 26189	14 bp downstream