rs27433516 SNP Detail

Summary

• ID
  rs27433516
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:129024875 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ACACTAATGT GCTCATTGTT TGCCAAATAT AGGAAGTGAG
  GATGGCCCAT GTTCCCGTGA GCTTTCACTT TAGTGAGGGA GACTGGGATG ACCTTAACCC
  R
  TGGAATAAAC AGGTCCTGAG CGGAGACTAG AGCTCTCTGG CCCAGGATTC TTCCAGCTGA
  GGAGGAACCC GTGTCTTCTG AGACTTGAGT TCTCGTCTG                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss37622839	NES08999690	PERLEGEN	MM_PANEL2	f	SNP	G	G	A	G	G	A	G	A	G
ss45221589	mCV23185314	ABI	CRAMUS_MOUSE	f	SNP		G	A
ss147582213	ENSMUSSNP713319	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs27433516					SNP	G	G	A	G	G	A	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37622839	NES08999690	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:129024875 () rs orientation: forward

Symbol	Name	Function Class
Gm14029	predicted gene 14029	within coordinates
Gm39932	predicted gene, 39932	within coordinates
Rr564860	regulatory region 564860	1230 bp distal
Rr564861	regulatory region 564861	972 bp distal
Rr564862	regulatory region 564862	within coordinates
Rr564863	regulatory region 564863	405 bp proximal
Rr564864	regulatory region 564864	848 bp proximal
Tssr26190	transcription start site region 26190	822 bp downstream