rs27433515 SNP Detail

Summary

• ID
  rs27433515
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:129025589 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CTAGTCTCGG TGCCTGGTTT CCATTCGGTC TCGTCTTCTC
  CATCTGCTTT CTCCTCCTGC TCGCCTCCTC CTCCATCCCC ACAGCCCACA CCAGGCTCTC
  R
  ATCCTCTACC ACTTAAGTCA GTGTGTTGAT GGCACTTAGC AAACGCTTAG GATGATCCAA
  ATGTTGCCAG CATCAGGAGC TCAGGCGGGC TGCCTTTGA                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss37622838	NES08999691	PERLEGEN	MM_PANEL2	f	SNP	A		G	A	A	G	A	G	A
ss45224670	mCV23185312	ABI	CRAMUS_MOUSE	f	SNP		A	G
ss147582228	ENSMUSSNP2834736	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs27433515					SNP	A	A	G	A	A	G	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37622838	NES08999691	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:129025589 () rs orientation: forward

Symbol	Name	Function Class
Gm14029	predicted gene 14029	within coordinates
Gm39932	predicted gene, 39932	within coordinates
Rr564860	regulatory region 564860	1944 bp distal
Rr564861	regulatory region 564861	1686 bp distal
Rr564862	regulatory region 564862	553 bp distal
Rr564863	regulatory region 564863	within coordinates
Rr564864	regulatory region 564864	134 bp proximal
Tssr26190	transcription start site region 26190	108 bp downstream