rs27432046 SNP Detail

Summary

• ID
  rs27432046
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:127997145 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CTGATGCCTT AAAAAAAAAA AAAAACCCTT CCCACAACTG
  CATCAGGATA ATAGATCGCC CAAGTATCTT TATGACTTAG TAGTTAATGT CTCCGCAGCT
  Y
  TACGGACCTC AAGTCGAACA TCAGTCTCGG CAGCAATGGT GTCTTCACAT TCCCCCTCTT
  TGACTTATTT ATGCTGTGCC TCTCAGTGTT TATAGTCAC                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37626865	NES08998128	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	T	C	T	C	C	T	C	T	T	C
ss45322002	mCV23908277	ABI	CRAMUS_MOUSE	f	SNP		C						T
ss147553396	ENSMUSSNP4677726	ENSEMBL	ENSEMBL_Sanger	f	SNP		C						T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27432046					SNP	C	C	C	C	C	T	C	T	C	C	T	C	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37626865	NES08998128	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:127997145 () rs orientation: forward

Symbol	Name	Function Class
Bcl2l11	BCL2 like 11	Intron
Rr367306	regulatory region 367306	1031 bp upstream
Rr564661	regulatory region 564661	1285 bp distal
Rr564662	regulatory region 564662	273 bp proximal
Rr564663	regulatory region 564663	896 bp proximal
Rr564664	regulatory region 564664	1865 bp proximal