rs27432044 SNP Detail

Summary

• ID
  rs27432044
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:127997498 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AAGAGGTTTT AATCAGGAGG AGCGGTCTGT CTTGTACCAG
  GCAGCATAGG TGTGGTACTG AGCTGTACCC CAGTCCGCAG ATGCCTCTGG GAGTGCCTGC
  S
  TGTGAGTTAC TGATGCAGAC ACGCTGGACA CAGGCCAAAA GATGGCTCTG CCAAGAGCTG
  AGGGCCCAGG GAAAAGAAGC TGATGCCCTC ACTCTTGCT                       
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37626863	NES08998132	PERLEGEN	MM_PANEL2	f	SNP	G		G	G	G	G	C	G	C	G	G	C	G	C	G	G
ss45306028	mCV23908285	ABI	CRAMUS_MOUSE	f	SNP		G	G						C
ss147553401	ENSMUSSNP694207	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	G						C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27432044					SNP	G	G	G	G	G	G	C	G	C	G	G	C	G	C	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37626863	NES08998132	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:127997498 () rs orientation: forward

Symbol	Name	Function Class
Bcl2l11	BCL2 like 11	Intron
Rr367306	regulatory region 367306	678 bp upstream
Rr564661	regulatory region 564661	1638 bp distal
Rr564662	regulatory region 564662	within coordinates
Rr564663	regulatory region 564663	543 bp proximal
Rr564664	regulatory region 564664	1512 bp proximal