rs27432039 SNP Detail

Summary

• ID
  rs27432039
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:127999181 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GGAAATGCCC TGGCCCCTTG AGCTTAAGAG CTGTGTAAAC
  AGTGGGGTGA GGAGAGCTCC CCTCACAGCT GGTGTCTGCG GGGACCTATG GAGTCTGAGA
  R
  GGAACAGACA GTCCCAGTCT GATTCATGGT CATTCCCAGA CAGTCCTTGG GAACCTTTCC
  CACCAAAATG AAAGGGGGGG GGGGGTGTCG GAGGCTGGG                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37626858	NES08998063	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	G	G	G	A	A	G	A	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27432039					SNP	A	A	A	A	A	G	G	G	A	A	G	A	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37626858	NES08998063	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:127999181 () rs orientation: forward

Symbol	Name	Function Class
Bcl2l11	BCL2 like 11	Intron
Rr367306	regulatory region 367306	804 bp downstream
Rr564662	regulatory region 564662	1488 bp distal
Rr564663	regulatory region 564663	356 bp distal
Rr564664	regulatory region 564664	within coordinates
Rr564665	regulatory region 564665	1717 bp proximal
Tssr20049	transcription start site region 20049	1430 bp upstream