rs27432035 SNP Detail

Summary

• ID
  rs27432035
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:127999552 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTTGAACCA GGTTGTGGCC
  GATGGCATTG AGGCAAATGT ATTCCTTTGC CTTTCGTTGT CCAATGAGAT GAGTGAGAAC
  CAGATGTGAG CACTCTGGAA CTCTCTGAAG GGCGCTCTGA AGTCTTCACA TGAACCCGAG
  GTTTCGTTCT AAACAGTCTT CAGATTGTAA CCAACCTACA CACGTCACAA CTAATGACTC
  S
  TTCTTAACTG CCCTTTCCTT CCTGGGCCTG ATGTGGGAGG GTGGGGTTGA CTCAGACCCT
  GTCTTCCACA GTGGGCAGCC CCTCTGGGAT CATTGTTTAT CCTTTGCAGC CAGAGGCACA
  TCCCTTCCAC TTTATTTAGT TTCTTTGGGG CACATTACCC CCAAATCACT GCTTCGTCAA
  GTCAATCACA GTGGCCAGAC                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss37626854	NES08998067	PERLEGEN	MM_PANEL2	f	SNP	C		C	C	C	C		G		C	C	C	G	G
ss45352699	mCV23908295	ABI	CRAMUS_MOUSE	f	SNP	C	C	C				C		G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs27432035					SNP	C	C	C	C	C	C	C	G	G	C	C	C	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37626854	NES08998067	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:127999552 () rs orientation: forward

Symbol	Name	Function Class
Bcl2l11	BCL2 like 11	Intron
Rr367306	regulatory region 367306	1175 bp downstream
Rr564662	regulatory region 564662	1859 bp distal
Rr564663	regulatory region 564663	727 bp distal
Rr564664	regulatory region 564664	230 bp distal
Rr564665	regulatory region 564665	1346 bp proximal
Tssr639	transcription start site region 639	1632 bp upstream
Tssr20049	transcription start site region 20049	1059 bp upstream
Tssr20050	transcription start site region 20050	1653 bp upstream