rs27432034 SNP Detail

Summary

• ID
  rs27432034
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:127999692 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTTTCGTTCT AAACAGTCTT
  CAGATTGTAA CCAACCTACA CACGTCACAA CTAATGACTC CTTCTTAACT GCCCTTTCCT
  TCCTGGGCCT GATGTGGGAG GGTGGGGTTG ACTCAGACCC TGTCTTCCAC AGTGGGCAGC
  CCCTCTGGGA TCATTGTTTA TCCTTTGCAG CCAGAGGCAC ATCCCTTCCA CTTTATTTAG
  Y
  TTCTTTGGGG CACATTACCC CCAAATCACT GCTTCGTCAA GTCAATCACA GTGGCCAGAC
  TCCACCTCTG AGAGAGTCCT AACCTGTCTA AATATCAGTG AACGTGGCTG GCAGTACAGA
  AACCCAAGTT CATTCTTTTC TTTTCCTCTG CTCCCTCCCA CACCCTCAGT CACGTCTCCT
  GAGACACCAA TCATCAGTGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37626853	NES08998068	PERLEGEN	MM_PANEL2	f	SNP	T		T	T	T	T		T	C	T	T	C	T	C	C	T
ss45210736	mCV23908302	ABI	CRAMUS_MOUSE	f	SNP	T	T	T				T		C
ss147553415	ENSMUSSNP3511610	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	T						C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27432034					SNP	T	T	T	T	T	T	T	T	C	T	T	C	T	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37626853	NES08998068	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:127999692 () rs orientation: forward

Symbol	Name	Function Class
Bcl2l11	BCL2 like 11	Intron
Rr367306	regulatory region 367306	1315 bp downstream
Rr564662	regulatory region 564662	1999 bp distal
Rr564663	regulatory region 564663	867 bp distal
Rr564664	regulatory region 564664	370 bp distal
Rr564665	regulatory region 564665	1206 bp proximal
Tssr639	transcription start site region 639	1492 bp upstream
Tssr20049	transcription start site region 20049	919 bp upstream
Tssr20050	transcription start site region 20050	1513 bp upstream