rs27432030 SNP Detail

Summary

• ID
  rs27432030
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:128000018 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGTTCATTC TTTTCTTTTC
  CTCTGCTCCC TCCCACACCC TCAGTCACGT CTCCTGAGAC ACCAATCATC AGTGACCTGG
  CGTGGCTCCT GTCCAGTACC CATGTGAAGG TTCACAGTTC CGGGATAGCT TTGGAATAGT
  TTGGTCTTCT GTTCGCTCTG TTTCCCCAGT GATGGAGAGT TCACTCGGTA CACTTGTACT
  Y
  CATGATGTCA CATCCTTCCC CCCTGGAATT TGAGTCTCCC TGCAATTCAG ATGGGCTATG
  TCTCTTGCCT TGCATACGCG CCTTCTCCAG ATTACGAGAG AGTTGCTAAG AACTCTGCTT
  CTGTTGTTGC AGGTGTTTGC AAATGATTAC CGCGAGGCTG AAGACCACCC TCAAATGGTT
  ATCTTACAAC TGTTACGCTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37626849	NES08998072	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27432030					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37626849	NES08998072	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:128000018 () rs orientation: forward

Symbol	Name	Function Class
Bcl2l11	BCL2 like 11	Intron
Rr367306	regulatory region 367306	1641 bp downstream
Rr564663	regulatory region 564663	1193 bp distal
Rr564664	regulatory region 564664	696 bp distal
Rr564665	regulatory region 564665	880 bp proximal
Tssr639	transcription start site region 639	1166 bp upstream
Tssr20049	transcription start site region 20049	593 bp upstream
Tssr20050	transcription start site region 20050	1187 bp upstream