rs27430098 SNP Detail

Summary

• ID
  rs27430098
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:105144521 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCTTCTTCT TCTTCTTCTT
  CTTCTTCTTC TTCTTCTTCT TCTTCTTCTT CTTCTTCTTC TTCTTCTTCT CCTCCTCCTC
  CTCCTCCTCC TCCTCCTCTT CCTCCTCTTC CTCCTTCTTC TCCTCCCCCT CCCCCCTCCC
  CCTCCCCCAC CTCCTCCTCC TCCTCCTCCT CCTCCTCCTC CTCCTTCTGC CTATCAGCAA
  R
  TGAACATATG TCTCCTTACT GTCAGTGCCC TTCTCTACTA ACTTACACAT CACAGAAACT
  TAACATTGCT GATCACTTGT TTTTCTAGCC TCCTACACAT CAAGGATACA GATGTGAGAC
  CTAGTCTTCA CCAATACAAG TGCCCTGCAG TATGAAATAA CTGCTGATAT ATGAGATAGG
  ACCTGTGTCC TCCTGGGTGC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	BTBR T<+> Itpr3/J	C3H/HeJ	KK/HlJ	MOLF/EiJ
ss37617340	NES09065860	PERLEGEN	MM_PANEL2	f	SNP	G	A	G	A
SNP Consensus Information
SNP					Consensus Type	BTBR T<+> Itpr3/J	C3H/HeJ	KK/HlJ	MOLF/EiJ
rs27430098					SNP	G	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37617340	NES09065860	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:105144521 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
D2Mit44	DNA segment, Chr 2, Massachusetts Institute of Technology 44			951 bp distal
Rr562210	regulatory region 562210			1811 bp distal
Rr562211	regulatory region 562211			806 bp distal
Them7	thioesterase superfamily member 7			Intron
				Noncoding-Transcript-Variant