rs27428923 SNP Detail

Summary

• ID
  rs27428923
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:105628799 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGGCCAAGC TTCCTACCCA
  GCTGTCTGCT ATTTTATTCT CCCTTTCACA AGAGCCTGGT GAGTTTTGCT TTGACTGTTT
  GCTTGCTTTG AAAGAATGGT AGCACATTTT TATTTAGAAA ATTTCAAATC CATTAAAAGA
  ATTTTAAATT CTCAAAGATC AATTTAAGCC TTCATTTCAA CTCAAAGCTC ATAAAGCTAA
  R
  ATAGCAATTT TAAGGTAAAA AAGTCCAACT GCTGTTCTAT AAAGCTTCAA CAATTGTTCT
  AATGCACGGT CTTAGCTATC AGCGTCTACT GAACATTTCC TTACTTTGAT GACACAAATT
  ACAACAACAC GAAGGACACA ATTTGTAGCA GCAAAGAGTA AATTTCTCAT AAATATTTTA
  ACTTGAAGAT TAAAAAGTTA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37615750	NES09064108	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	G	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	A/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27428923					SNP	A	A	A	G	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37615750	NES09064108	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:105628799 () rs orientation: forward

Symbol	Name	Function Class
Elp4	elongator acetyltransferase complex subunit 4	Intron
Rr366618	regulatory region 366618	within coordinates
Rr562288	regulatory region 562288	291 bp distal
Rr562289	regulatory region 562289	1450 bp proximal
Rr562290	regulatory region 562290	1603 bp proximal