rs27428921 SNP Detail

Summary

• ID
  rs27428921
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:105629927 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGAAAGAAA TTGTTGATTT
  TTTACACATT ACTAGGACTT GGCAATGAAT CCACATTTTG TGTGTGTGTG TGTTCTAGCT
  GATCAACTGT GTACTCTAAC TTTGTTTTGA AAAGGATGGT TCTTCATTTG TTTTAGAGCA
  TGATTTTAGA AATACCATTT GTTTAAACTG ACAGAGTAGA TATTTATGAG TTTTGCCTTT
  W
  TTCAGTCAAC ATTCTCTTAA ATATTAACAG AACATGCTCT GAAGGCTTTC AGAAATGGGA
  TGCAGAAAAT ACGATAAAAA TAGGCTAGAA TAAATAATGA CATATAGTAT CCAAAAGCAA
  TTTCAGGCTT TCCCCAAAAC TTTACATCAT CTAATTTTAC ATTATGGAAA TTAATCCGAT
  ACTTGGTTCT TTATGTTTTG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37615745	NES09064113	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	T	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27428921					SNP	A	A	A	A	A	T	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37615745	NES09064113	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:105629927 () rs orientation: forward

Symbol	Name	Function Class
Elp4	elongator acetyltransferase complex subunit 4	Intron
Rr366618	regulatory region 366618	within coordinates
Rr562288	regulatory region 562288	1419 bp distal
Rr562289	regulatory region 562289	322 bp proximal
Rr562290	regulatory region 562290	475 bp proximal
Rr562291	regulatory region 562291	1167 bp proximal
Rr562292	regulatory region 562292	1971 bp proximal