rs27428920 SNP Detail

Summary

• ID
  rs27428920
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:105630052 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATTTGTTTTA GAGCATGATT
  TTAGAAATAC CATTTGTTTA AACTGACAGA GTAGATATTT ATGAGTTTTG CCTTTATTCA
  GTCAACATTC TCTTAAATAT TAACAGAACA TGCTCTGAAG GCTTTCAGAA ATGGGATGCA
  GAAAATACGA TAAAAATAGG CTAGAATAAA TAATGACATA TAGTATCCAA AAGCAATTTC
  R
  GGCTTTCCCC AAAACTTTAC ATCATCTAAT TTTACATTAT GGAAATTAAT CCGATACTTG
  GTTCTTTATG TTTTGTTTCA TGAGGGCCTT TCAAGTGATA TATTCTACTT CTTTATATTT
  AAATGTCTTA GCATGCAATC ACAGACATCC CCAGTGTCCA GTTAGTGTCT GTGATGCTGC
  AGTAGGTTAA AGATACTAAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37615744	NES09064114	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	G	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27428920					SNP	A	A	A	A	A	G	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37615744	NES09064114	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:105630052 () rs orientation: forward

Symbol	Name	Function Class
Elp4	elongator acetyltransferase complex subunit 4	Intron
Rr366618	regulatory region 366618	within coordinates
Rr562288	regulatory region 562288	1544 bp distal
Rr562289	regulatory region 562289	197 bp proximal
Rr562290	regulatory region 562290	350 bp proximal
Rr562291	regulatory region 562291	1042 bp proximal
Rr562292	regulatory region 562292	1846 bp proximal