rs27428919 SNP Detail

Summary

• ID
  rs27428919
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:105630226 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GACATATAGT ATCCAAAAGC
  AATTTCAGGC TTTCCCCAAA ACTTTACATC ATCTAATTTT ACATTATGGA AATTAATCCG
  ATACTTGGTT CTTTATGTTT TGTTTCATGA GGGCCTTTCA AGTGATATAT TCTACTTCTT
  TATATTTAAA TGTCTTAGCA TGCAATCACA GACATCCCCA GTGTCCAGTT AGTGTCTGTG
  M
  TGCTGCAGTA GGTTAAAGAT ACTAAAGTTT AAAATCAGCT TAGAATAATA CCACATTGAG
  CACAAAATGA TAGCCTGTCA TTAGGAAGAG GCAGCCAGAG CCAGGTCCAG ATGGGAGACT
  GGCTGGGGAA GGCTGGGGCA GGTGGGGAAG TGACAGGAAC CTGACAGAAG ACAGGACTAC
  TCCCTCTGCT GGCAAGGCCC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37615743	NES09064115	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	C	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27428919					SNP	A	A	A	A	A	C	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37615743	NES09064115	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:105630226 () rs orientation: forward

Symbol	Name	Function Class
Elp4	elongator acetyltransferase complex subunit 4	Intron
Rr366618	regulatory region 366618	38 bp downstream
Rr562288	regulatory region 562288	1718 bp distal
Rr562289	regulatory region 562289	23 bp proximal
Rr562290	regulatory region 562290	176 bp proximal
Rr562291	regulatory region 562291	868 bp proximal
Rr562292	regulatory region 562292	1672 bp proximal