rs27428918 SNP Detail

Summary

• ID
  rs27428918
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:105631505 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAATTGTGGC ACTAACAACT
  CTTTGGAAGC TTTCAGACAC AGTGTACAAT TTGCTGGTCT AATTAAATAT TAATTCTAAG
  TGTTACATTT TGTGGCTAAG AGCTTTTATT TTCCATCATC AGCCTGGAAG AGAAAGAGGT
  TACAAGGCTA ATTTAATCTC TCCCTTTGTA CTCCCCAACA TTAAAGATTG ACTACGTAGG
  R
  TATGAAAACA TTATTAAAAG AGCTAGAACT CTTTATATAA TAATAATGTA ATTAATAGCA
  AAGGGCTAAA ACATAACATC AGGGCACACT ATTTGACCTG GTATTTAAAC AGCTGGAAAA
  TATCAATAGT AGCAAGCATA TTTTGTCTTA GCTTTAAGAG ATAGCTATAT TTTTTCAAGG
  CTATTAAGTG TTCTTTCAGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37615742	NES09064116	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	G	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27428918					SNP	A	A	A	A	A	G	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37615742	NES09064116	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:105631505 () rs orientation: forward

Symbol	Name	Function Class
Elp4	elongator acetyltransferase complex subunit 4	Intron
Rr366618	regulatory region 366618	1317 bp downstream
Rr562289	regulatory region 562289	1003 bp distal
Rr562290	regulatory region 562290	1082 bp distal
Rr562291	regulatory region 562291	within coordinates
Rr562292	regulatory region 562292	393 bp proximal