rs27428911 SNP Detail

Summary

• ID
  rs27428911
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:105634613 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AATATATTTT CTTTTCATTT
  TGCTAACAAA ACTGTATTTA GGCACAAAAC TAAGCTTTTA TTTCCAGAAA GAAATATTAC
  TGATTCTCAT TTTTTTACAA GCACACACTA TCACTGGGAT TAAAAAAAAA AGTATAAAAT
  GTTTACATAA TTTTGAGATA GATAACAAAT CTCACCAATA GTTAAGACAA ATGCTACTTA
  Y
  AGATCAGAAA GAAATGATGG TGTTATAGCT GACTAGATAT AGAAATTAAA ATGTCCCATT
  TTACAATACT TTATGCTCAC TATGCCAAAA ATAATGTTGC TAAAGGCATG GCATGGGATA
  GTCACTCATT CCCAAGAGTA AGCAGGGCCG GAGGAGTGCT CCTTGTACTC AGAGGATAAT
  AACCACTCAC ATAGAGATTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37615735	NES09063945	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	T	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27428911					SNP	C	C	C	C	C	T	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37615735	NES09063945	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:105634613 () rs orientation: forward

Symbol	Name	Function Class
Elp4	elongator acetyltransferase complex subunit 4	Intron
Rr562293	regulatory region 562293	77 bp proximal
Rr562294	regulatory region 562294	1885 bp proximal