rs27428910 SNP Detail

Summary

• ID
  rs27428910
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:105634689 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTACTGATTC TCATTTTTTT
  ACAAGCACAC ACTATCACTG GGATTAAAAA AAAAAGTATA AAATGTTTAC ATAATTTTGA
  GATAGATAAC AAATCTCACC AATAGTTAAG ACAAATGCTA CTTACAGATC AGAAAGAAAT
  GATGGTGTTA TAGCTGACTA GATATAGAAA TTAAAATGTC CCATTTTACA ATACTTTATG
  Y
  TCACTATGCC AAAAATAATG TTGCTAAAGG CATGGCATGG GATAGTCACT CATTCCCAAG
  AGTAAGCAGG GCCGGAGGAG TGCTCCTTGT ACTCAGAGGA TAATAACCAC TCACATAGAG
  ATTTATACAT AAAGATTTAA AGTCTTCGTA TAATATAACA TGTAGAAGAA TAGAAGAGGG
  CTTAGTTAAG AGGGCTTAGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss37615734	NES09063946	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	T	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs27428910					SNP	C	C	C	C	C	T	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37615734	NES09063946	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:105634689 () rs orientation: forward

Symbol	Name	Function Class
Elp4	elongator acetyltransferase complex subunit 4	Intron
Rr562293	regulatory region 562293	1 bp proximal
Rr562294	regulatory region 562294	1809 bp proximal