rs27428904 SNP Detail

Summary

• ID
  rs27428904
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:105636512 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGCAAAACT GTCCTAGTCA
  CACAATCACC ATTTAAACTC TGACTTAGAG ACTCCAGAAA TAGTTCTGGT CATGGTAGGA
  AAACTGTTGT GAGTCTTGTG AAGTTTATGC TGCTAGAAAA TAAGCACGTA TCTGTGCTTC
  CTGGTCTGCC TTTAGCCCAA TCCAGGAGAA AACATTGCTA GGTGTTCTTC ATGAGAAGGG
  Y
  CAGGTAACTG AAGAGCTCTA TTCTCCTTCT GCTGTAAGGA GTGGTGGCCA GACTGTCTAG
  CATGCCACAC AGGCGTTTCC CTCTTATCTG CTCTCAGTTC TTCTACTGCA GTAACACACC
  AAACATTTTC ATTTCTGACA GATCTCTCTC TTCTGATTAT CAATTCTGAG GGCCTCTGAA
  GTAAAACCCA GCACTGACGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37615728	NES09063955	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27428904					SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37615728	NES09063955	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:105636512 () rs orientation: forward

Symbol	Name	Function Class
Elp4	elongator acetyltransferase complex subunit 4	Intron
Rr562293	regulatory region 562293	1225 bp distal
Rr562294	regulatory region 562294	within coordinates
Rr562295	regulatory region 562295	443 bp proximal