rs27428896 SNP Detail

Summary

• ID
  rs27428896
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:105637980 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGGTCTCTG TTTTGTTTTT
  CATTAATTTT TATTCACTTT TAAAATAAAT ATAAAATTAC ATACTCAAGT TGTTATTTTA
  CAACTGTTTT TCTTTACTTG CAATTTTGCA GAAGAAAGCA TACATCCATA TATTTGTCAT
  TTGTCAAGAA TGGAACTTTT TGCCTAATCT TTCACATACT CTAATGTGAC AAGGACTTTG
  Y
  AATGATGATT TTCTCTTTAA AAATACTAAA TAATAGCAGT GTTAATCAAG AGCTAATTTG
  CAGAGTTTTT GTGACGGCTG AGGAGCTCTG TGATATAACT ATAAAGATGG AAGGGGCTAG
  AATCTAAGGA GAAACATAAG CCTTGCCACT TACTGATTGG ACCACCTTGG GAAGCAGAGA
  TTAGAAATAA TCGTCTCCCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37615720	NES09063892	PERLEGEN	MM_PANEL2	f	SNP	C		T	C	C	C	C		C	C	C	C	C	C	C	C	C
ss45369387	mCV27580653	ABI	CRAMUS_MOUSE	f	SNP		C	T					C		C
ss147169445	ENSMUSSNP1544745	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	T							C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27428896					SNP	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37615720	NES09063892	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:105637980 () rs orientation: forward

Symbol	Name	Function Class
Elp4	elongator acetyltransferase complex subunit 4	Intron
Rr562294	regulatory region 562294	1206 bp distal
Rr562295	regulatory region 562295	683 bp distal