rs27426655 SNP Detail

Summary

• ID
  rs27426655
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:115895298 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GCCAGCTCAA AGGGAGAGAA GGCATGGGGC AGGGCCCTGT
  AGGAGAGGAT TTATATCTAG GTAAGTGTTG GAGATTTAAA CCTACCCTTT GCGCCATCAG
  Y
  CTGCGCTCCA ATAAACTCCT GGATGTGTCG TATATTTAAT ATCCCAGTCC GGATAAGAAA
  GTGAGCTAGG TTGAAGAGTC CTTTTTTTCC AAACCAAGGA                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	MOLF/EiJ	NZW/LacJ
ss37660577	NES09039139	PERLEGEN	MM_PANEL2	f	SNP	C	T	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	MOLF/EiJ	NZW/LacJ
rs27426655					SNP	C	T	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37660577	NES09039139	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:115895298 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
2700033N17Rik	RIKEN cDNA 2700033N17 gene			1372 bp downstream
Cpgi12067	CpG island 12067			105 bp distal
Cpgi12068	CpG island 12068			715 bp proximal
Cpgi12069	CpG island 12069			1720 bp proximal
Meis2	Meis homeobox 2			Intron
				mRNA-UTR
Rr562985	regulatory region 562985			189 bp distal
Rr562986	regulatory region 562986			within coordinates
Rr562987	regulatory region 562987			1012 bp proximal
Rr562988	regulatory region 562988			1875 bp proximal
Tssr25720	transcription start site region 25720			917 bp upstream
Tssr25721	transcription start site region 25721			219 bp upstream
Tssr25722	transcription start site region 25722			68 bp upstream
Tssr25723	transcription start site region 25723			46 bp upstream
Tssr25724	transcription start site region 25724			311 bp downstream
Tssr25725	transcription start site region 25725			400 bp downstream
Tssr25726	transcription start site region 25726			828 bp downstream
Tssr25727	transcription start site region 25727			856 bp downstream
Tssr25728	transcription start site region 25728			874 bp downstream
Tssr25729	transcription start site region 25729			901 bp downstream
Tssr25730	transcription start site region 25730			968 bp downstream
Tssr25731	transcription start site region 25731			981 bp downstream
Tssr25732	transcription start site region 25732			1127 bp downstream
Tssr25733	transcription start site region 25733			1217 bp downstream