rs27425706 SNP Detail

Summary

• ID
  rs27425706
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:121978667 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ATGGGCACGC GGAAGCTGAG CCCCGACCAC GGGAAGTCAG
  ACCGCCGCTG CGCAGCTTCA TTTGCACTCG CAGAGAGGCT CGATCCAACC GAAGTCGAGA
  R
  AAAATGGGCT TGGGTCCCAG ACTCTGCGAT GTTTCCAAAG CTTTCTGATC ATTAACTTTG
  TATCTAGTAA TAACCTTAAA GGTCGCCGGG CAGTGGTGG                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37644526	NES09020285	PERLEGEN	MM_PANEL2	f	SNP	G	A	G	A	G	A		G	A	G	G		G	G	G	G		G
ss45358095	mCV24434400	ABI	CRAMUS_MOUSE	f	SNP	G	A					G		A
ss147410017	ENSMUSSNP2034079	ENSEMBL	ENSEMBL_Sanger	f	SNP		A							A
ss320487206	CHEV_2_121973922	CHEVERUD	SCREENING_POP	f	SNP												G					A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27425706					SNP	G	A	G	A	G	A	G	G	A	G	G	G	G	G	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37644526	NES09020285	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:121978667 () rs orientation: forward

Symbol	Name	Function Class
B2m	beta-2 microglobulin	Intron
Cpgi12169	CpG island 12169	within coordinates
Patl2	protein associated with topoisomerase II homolog 2 (yeast)	Intron
Rr397252	regulatory region 397252	457 bp downstream
Rr563912	regulatory region 563912	490 bp distal
Rr563913	regulatory region 563913	within coordinates
Tssr19804	transcription start site region 19804	692 bp downstream
Tssr19805	transcription start site region 19805	490 bp downstream
Tssr19806	transcription start site region 19806	458 bp downstream
Tssr19807	transcription start site region 19807	978 bp upstream
Tssr19808	transcription start site region 19808	1031 bp upstream
Tssr19809	transcription start site region 19809	1375 bp upstream
Tssr25953	transcription start site region 25953	1229 bp upstream
Tssr25954	transcription start site region 25954	666 bp upstream