rs27425659 SNP Detail

Summary

• ID
  rs27425659
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:121994365 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CTTTAAGGAG CTTGGGCACC AGCTTAGGAA AAATCTTTAC
  AGAATACAGT AAAGGCCAAG CAAAATGTGT GAGGGACGAG GAATGCAAAC CTTGCAGAAA
  R
  AGAGTTTCCA GGAAGTGCTC GTTACACCAG GCAGCAGAGC AGCTGTTTCC CTAGAGCAGG
  CAGTCACAAG GATCTAAGAT GTAGGACAGC AGACTCCAC                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ
ss37644478	NES09019884	PERLEGEN	MM_PANEL2	f	SNP	A			A	G	A	G	G	A	G
ss147410422	ENSMUSSNP5951443	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ
rs27425659					SNP	A	A	A	A	G	A	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37644478	NES09019884	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:121994365 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Patl2	protein associated with topoisomerase II homolog 2 (yeast)			Intron
Rr373780	regulatory region 373780			1257 bp downstream
Rr563920	regulatory region 563920			1973 bp distal
Rr563921	regulatory region 563921			within coordinates
Trim69	tripartite motif-containing 69			Intron
				Noncoding-Transcript-Variant