rs27425052 SNP Detail

Summary

• ID
  rs27425052
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:121404018 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGACTTGGCT GTAGCCTGGA
  GTGTCATATT TAAGCCCTAG CCTAAACTGC TCTTGGTGAG GAGTTTAGCC TCACTAGGAG
  AAGGCTGTGC TCACAGTGGA TCACCATTGC TGGGAGTGCC ACTCTGTGTG AACACTCTGT
  GTGAGAGCAG AGGACATGGC CCAGAGCTGT GTGCTCAGTG GCCAGGGCCC CGAGCGAGTG
  Y
  CACGTACCTG AGTTCGGTCT TGTGAATCTC AGCAATTTTC TTTTCCAGTT TCTCTGAATG
  TTTCGGGAAA AATTGGAACT TGGAGCTGTA GCCTTCAGGG TGCTTTCCCG GGTCATAATC
  CCCAATCTCC GCTTTTCAAA GGCAGGGAAG AGAAAACAAC AAGATTAGCC CACAGCTCAA
  AGGCCAAGGC AGACCCTGAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss37645471	NES09016137	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	C
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs27425052					SNP	T	T	T	T	T	T	T	T	T	T	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37645471	NES09016137	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:121404018 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Frmd5	FERM domain containing 5			Intron
				Noncoding-Transcript-Variant
				Splice-Site
Rr563852	regulatory region 563852			1281 bp distal
Rr563853	regulatory region 563853			1560 bp distal
Rr563854	regulatory region 563854			644 bp proximal