rs27425050 SNP Detail

Summary

• ID
  rs27425050
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:121404431 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGAAG GCTTGGGAGC TATGCTCTGC
  R
  TGGCAGCAGC ACACAGTGGG CTTGG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	MOLF/EiJ	PWD/PhJ	SM/J
ss37645469	NES09016140	PERLEGEN	MM_PANEL2	f	SNP				G	A
ss147391687	ENSMUSSNP3004582	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A
ss320483857	CHEV_2_121399686	CHEVERUD	SCREENING_POP	f	SNP			G			A
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	MOLF/EiJ	PWD/PhJ	SM/J
rs27425050					SNP	A	A	G	G	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37645469	NES09016140	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:121404431 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Frmd5	FERM domain containing 5			Intron
				Noncoding-Transcript-Variant
Rr563852	regulatory region 563852			1694 bp distal
Rr563853	regulatory region 563853			1973 bp distal
Rr563854	regulatory region 563854			231 bp proximal
Rr563855	regulatory region 563855			1810 bp proximal