rs27425049 SNP Detail

Summary

• ID
  rs27425049
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:121404480 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGGCA AGATGACAGG AACCCCTGGG
  M
  GCCAGCTTAG ATACCCAGAT CCCAT                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	DBA/2J	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SM/J
ss37645468	NES09016141	PERLEGEN	MM_PANEL2	f	SNP		C			A	C	C
ss147391697	ENSMUSSNP2733809	ENSEMBL	ENSEMBL_Sanger	f	SNP	C		C
ss320483858	CHEV_2_121399735	CHEVERUD	SCREENING_POP	f	SNP				A				C
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	DBA/2J	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SM/J
rs27425049					SNP	C	C	C	A	A	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37645468	NES09016141	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:121404480 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Frmd5	FERM domain containing 5			Intron
				Noncoding-Transcript-Variant
Rr563852	regulatory region 563852			1743 bp distal
Rr563854	regulatory region 563854			182 bp proximal
Rr563855	regulatory region 563855			1761 bp proximal