rs27425045 SNP Detail

Summary

• ID
  rs27425045
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:121404674 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGGTT ATAATCCAGG GACCAAGTAC
  K
  GCAGCACTGC ATTCTAAGGC TGATT                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SM/J
ss37645464	NES09016145	PERLEGEN	MM_PANEL2	f	SNP		G	G	G			T	G	G
ss147391732	ENSMUSSNP6791952	ENSEMBL	ENSEMBL_Sanger	f	SNP	G				G
ss320483865	CHEV_2_121399929	CHEVERUD	SCREENING_POP	f	SNP						T				G
SNP Consensus Information
SNP					Consensus Type	A/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SM/J
rs27425045					SNP	G	G	G	G	G	T	T	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37645464	NES09016145	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:121404674 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Frmd5	FERM domain containing 5			Intron
				Noncoding-Transcript-Variant
Rr373770	regulatory region 373770			1839 bp upstream
Rr563852	regulatory region 563852			1937 bp distal
Rr563854	regulatory region 563854			within coordinates
Rr563855	regulatory region 563855			1567 bp proximal